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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45749703_45750303_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45749703 - 45750303
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATTAC
5'SS Class:
major
3'SS Sequence:
TGAACTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATATTTTGAACT
Flanking Amino Acid:
EEIAEERQAKNKAMEEMLKM
Intron Amino Acid Position:
1264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
71.9
34.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
75.8
0.58
1
68.6
41.8
Minor 5ss
38.8
-1.3
3.1
52.1
45.1
Minor BPS
66.8
0.61
1.3
79.82
35.7

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637