About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45752165_45752466_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45752165 - 45752466
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTTAACTTGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGCTTTTTAACT
Flanking Amino Acid:
VDSSSVTFPQCPKTPPNFDV
Intron Amino Acid Position:
1148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.4
36.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
1.1
66
44.8
Minor 5ss
43.4
-0.7
2.8
56.4
47.7
Minor BPS
76.2
0.9
1.1
83.79
37.4

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637