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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45752575_45753455_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45752575 - 45753455
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAA
5'SS Class:
strong_major
3'SS Sequence:
GGATTTCTAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTAATTTAATT
Flanking Amino Acid:
EALIQELREQLDRMTEELEK
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
70.2
35.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
64
0.32
1
59.1
41.7
Minor 5ss
30.6
-2.2
3.1
38.6
46.4
Minor BPS
57.9
0.33
1.5
70.21
41

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637