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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45753603_45755062_R

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
45753603 - 45755062
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAACA
5'SS Class:
strong_major
3'SS Sequence:
TGACTTAAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTACTCATCC
Flanking Amino Acid:
ERKEIADNIERDLLCEDLQH
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.8
31.6
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
56.7
0.15
1
52.6
40.5
Minor 5ss
33.1
-1.9
2.9
41.4
44.7
Minor BPS
57.1
0.2
2
76.03
40

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637