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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45755186_45755985_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45755186 - 45755985
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TATTTAATCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCCTAAAAT
Flanking Amino Acid:
GLTRELEDINCKYNLVLAAK
Intron Amino Acid Position:
1022

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
76.1
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.7
0.53
0.9
71.7
37.9
Minor 5ss
54.8
0.16
2.3
72.3
37.3
Minor BPS
75.3
0.87
1.7
93.4
34.6

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637