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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45757374_45757604_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45757374 - 45757604
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAACAG
5'SS Class:
major
3'SS Sequence:
TTATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCCTTCGTAATT
Flanking Amino Acid:
SDMVTRSEQQEEKVQKLEQE
Intron Amino Acid Position:
958

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
56
43
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
90.5
0.91
0.7
89.1
27.5
Minor 5ss
29.6
-2.3
3.3
38.4
46.6
Minor BPS
57.2
0.3
2
74.4
43.5

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637