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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45760524_45761056_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45760524 - 45761056
Intron Length:
533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTCTA
5'SS Class:
major
3'SS Sequence:
TGTTTTCCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
AAATCAGTAACA
Flanking Amino Acid:
QFQDAQSKADILKSEVHDLR
Intron Amino Acid Position:
798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
73.5
37.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
74.3
0.55
0.9
71
34.7
Minor 5ss
39.7
-1.2
3
51.9
39.9
Minor BPS
49.5
-0
2.2
65.56
40

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637