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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45761163_45761895_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45761163 - 45761895
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTCCATTTAAAA
Flanking Amino Acid:
LEHHSAQIQELLSSERNDWS
Intron Amino Acid Position:
763

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
81.1
0.7
0.7
74.1
31.1
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
56.4
0.2
1.6
67.09
39

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637