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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45762004_45762898_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45762004 - 45762898
Intron Length:
895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GCTGTTCTAATT
Flanking Amino Acid:
AIAEELKAAQEQLSTMQTKL
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.6
0.55
1
68.1
42.3
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
48.5
-0
1.7
64.06
41.3

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637