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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45763554_45765927_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45763554 - 45765927
Intron Length:
2374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGACAA
5'SS Class:
major
3'SS Sequence:
ACTTCCTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACTTCCTAAACA
Flanking Amino Acid:
QEYEEFKELTKKKHMELESE
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
66.7
34.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
67.7
0.4
1
62.9
36.9
Minor 5ss
27.5
-2.6
3
30.5
36.5
Minor BPS
71.3
0.66
1.7
77.53
39.6

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637