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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45766070_45766360_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45766070 - 45766360
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTATGATT
Flanking Amino Acid:
QASATEKTTGGQHLHSTTIS
Intron Amino Acid Position:
567

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.1
0.65
0.8
73.9
36.8
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
68.7
0.67
1.5
87.78
31

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637