About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45768676_45770260_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45768676 - 45770260
Intron Length:
1585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
ACTTACCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GGTTCTTTGACT
Flanking Amino Acid:
PSMRDISVAQGAIENGKNSI
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.4
0.55
0.9
66.2
35
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
76.7
0.92
1.1
84.8
35.4

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637