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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45772309_45772404_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45772309 - 45772404
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCATTTCTATTC
Flanking Amino Acid:
DTHTEGLRLKEAGNINRSLS
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
82.6
30.6
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
79.9
0.67
0.8
73
37.4
Minor 5ss
39.2
-1.2
2.7
51.6
44.8
Minor BPS
45.7
-0.3
1.8
54.68
38.1

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637