About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45772615_45773347_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45772615 - 45773347
Intron Length:
733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCATGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATCGTTTAATG
Flanking Amino Acid:
VLSSAAEAYQVLTMGWRNRR
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.3
38.2
Major BPS
100
1.24
0.5
100
0
Major PPT
74.4
0.55
0.9
74.2
35.5
Minor 5ss
50
0
2.4
66.9
44.3
Minor BPS
55.3
0.03
1.8
61.67
40.7

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637