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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45773528_45773900_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45773528 - 45773900
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTATAGTGTACA
Flanking Amino Acid:
FFLIEREKEKAGSGKSFLCK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.2
37.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
46.4
-0.4
3.1
64.5
46.9
Minor BPS
42.8
-0.5
2.5
62.22
43.5

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637