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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45776155_45777613_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45776155 - 45777613
Intron Length:
1459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAACT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAT
U12 Branch Point Sequence:
TTTTCTTTCCCT
Flanking Amino Acid:
DYVANMDTTQESVFSTVAKN
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80
32.5
Major BPS
56.7
0.17
1.4
64.7
41
Major PPT
75.8
0.58
0.8
67.5
37.8
Minor 5ss
36.2
-1.6
3
50.8
45.2
Minor BPS
47.8
-0
3.6
87.23
39

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637