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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45777798_45779094_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
45777798 - 45779094
Intron Length:
1297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
AATATCCGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TAATGCATAAAT
Flanking Amino Acid:
DSALPLLNSPSVEGDAIKVY
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
63.4
0.3
1
59.8
41.8
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
49.6
0.05
2.1
72.87
43

Associated Gene:

Gene:
KIF15
Ensembl Gene ID:
ENSAPLG00000012803
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013432
45746350 - 45780986
34637