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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45781339_45781937_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45781339 - 45781937
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
CCTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
ACCCGCTGATCG
Flanking Amino Acid:
HRDAPTVDTKREQLPLADSD
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
85.7
0.8
0.7
80.5
24.8
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
40
-0.8
2
39.74
43.8

Associated Gene:

Gene:
KIAA1143
Ensembl Gene ID:
ENSAPLG00000017133
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045178
45781231 - 45796909
15679