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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45782098_45788271_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
45782098 - 45788271
Intron Length:
6174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCATTTTATT
Flanking Amino Acid:
IKEALKSGEPDGEPEPADGK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
78.1
29.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.3
0.7
0.9
75.6
38.3
Minor 5ss
31.2
-2.2
3.3
42.9
44.7
Minor BPS
49.6
0.05
1.8
70.01
41.1

Associated Gene:

Gene:
KIAA1143
Ensembl Gene ID:
ENSAPLG00000017133
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045178
45781231 - 45796909
15679