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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45788355_45796208_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
45788355 - 45796208
Intron Length:
7854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTAAAT
U12 Branch Point Sequence:
TGGTCATTAAAT
Flanking Amino Acid:
RSSEKLLDFNREGWYHLTVA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
79.7
29
Major BPS
73.5
0.58
1
79.3
29.4
Major PPT
72.7
0.51
1
65.2
39.7
Minor 5ss
42.9
-0.8
2.7
55.2
42.1
Minor BPS
64.6
0.54
1.7
79.74
41.5

Associated Gene:

Gene:
KIAA1143
Ensembl Gene ID:
ENSAPLG00000017133
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045178
45781231 - 45796909
15679