Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4582144_4589197_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4582144 - 4589197

Intron Length:

7054

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGGCTT

5'SS Class:

major

3'SS Sequence:

TCTTTTTCCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTGAT

U12 Branch Point Sequence:

TTACCCTTACAG

Flanking Amino Acid:

LVEENGGLQKGDQMQVMPIP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.3

73.4

43.3

Major BPS

61.1

0.28

1.2

52.7

43.2

Major PPT

86.9

0.83

0.7

80.6

31.5

Minor 5ss

32.1

-2

3.4

47.7

47.8

Minor BPS

55.5

0.04

1.8

63.4

43.8

Associated Gene:

Gene:

CTDSPL

Ensembl Gene ID:

ENSAPLG00000030602

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017425

4542452 - 4612877

70426

ENSAPLT00000010273

4553987 - 4612877

58891