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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45843408_45849318_F

Intron Information:

Intron Rank:
143674
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
45843408 - 45849318
Intron Length:
5911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTCGTCT
5'SS Class:
weak_major
3'SS Sequence:
TCTTATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCATTCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.2
61.8
39.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.7
0.78
0.7
80.1
31.6
Minor 5ss
45.6
-0.5
3.1
65.3
46.1
Minor BPS
57.8
0.32
1.6
68.8
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022976
45842388 - 45856458
14071