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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45853936_45856299_F

Intron Information:

Intron Rank:
143676
Intron Class:
major
Intron Phase:
Intron Coordinates:
45853936 - 45856299
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAATA
5'SS Class:
major
3'SS Sequence:
TCATGTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTGTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
73.4
37.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
73.7
0.53
0.9
65.4
40.9
Minor 5ss
42.7
-0.8
2.8
49.3
46.7
Minor BPS
47.3
-0.3
2.2
57.98
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023032
45853767 - 45856358
2592