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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45865855_45866091_F

Intron Information:

Intron Rank:
143679
Intron Class:
major
Intron Phase:
Intron Coordinates:
45865855 - 45866091
Intron Length:
237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTGGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TCTGCCTAAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.7
35.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81
0.7
0.9
80.5
31.5
Minor 5ss
29.7
-2.3
3.5
40.9
45.7
Minor BPS
51.9
0.06
2.1
66.36
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027413
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043772
45856028 - 45866169
10142
ENSAPLT00000041363
45856028 - 45866169
10142