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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45885445_45897402_F

Intron Information:

Intron Rank:
135986
Intron Class:
major
Intron Phase:
Intron Coordinates:
45885445 - 45897402
Intron Length:
11958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGCACC
5'SS Class:
major
3'SS Sequence:
CTTTCTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TCTTCTTTAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
64.2
40.1
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
46.9
-0.3
2.5
58.5
40.3
Minor BPS
75.9
0.79
1.3
79.33
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023237
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030475
45885192 - 45902935
17744