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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4595838_4600763_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4595838 - 4600763
Intron Length:
4926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCATCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTCTTGTCATCT
Flanking Amino Acid:
DETLVHSSFKPISNADFIVP
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.5
0.62
0.8
69.9
36.3
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
46
-0.2
2.4
71.23
45.9

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023072
4542452 - 4612877
70426
ENSAPLT00000019864
4542452 - 4612877
70426
ENSAPLT00000017425
4542452 - 4612877
70426
ENSAPLT00000010273
4553987 - 4612877
58891