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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45979950_45989623_F

Intron Information:

Intron Rank:
146512
Intron Class:
major
Intron Phase:
Intron Coordinates:
45979950 - 45989623
Intron Length:
9674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTCCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGGATATTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
71.6
0.49
0.8
66.1
34.9
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
50.2
0.08
1.7
67.96
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028941
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045182
45979858 - 45993332
13475