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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_45989794_45993246_F

Intron Information:

Intron Rank:
146513
Intron Class:
major
Intron Phase:
Intron Coordinates:
45989794 - 45993246
Intron Length:
3453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTCCTTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
78.7
0.65
0.8
70.4
35.2
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
61.7
0.36
1.6
74.74
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028941
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045182
45979858 - 45993332
13475