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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46000685_46005652_R

Intron Information:

Intron Rank:
135513
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
46000685 - 46005652
Intron Length:
4968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
TCCCTGTGCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
74.6
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
56.9
0.16
1.1
57.6
36.5
Minor 5ss
65.5
0.52
2.2
80.9
32.5
Minor BPS
60.8
0.32
1.8
73.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020343
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021627
46000188 - 46006243
6056