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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46009616_46009876_F

Intron Information:

Intron Rank:
127176
Intron Class:
major
Intron Phase:
Intron Coordinates:
46009616 - 46009876
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTGGA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.1
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
30.8
-2.2
3.4
37.1
42.6
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033504
46008703 - 46010242
1540