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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46026066_46026152_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46026066 - 46026152
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AATACTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTTTCTTCAAAT
Flanking Amino Acid:
LTKLLNDEDQVVVNKAAVMV
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
77.3
0.68
1
81.5
27
Major PPT
67.1
0.39
0.9
60
36.9
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
66
0.58
1.6
82.62
38.2

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024642
46024892 - 46033208
8317
ENSAPLT00000014096
46024892 - 46033208
8317