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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46026685_46027060_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46026685 - 46027060
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTACTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GAATTTTTACTT
Flanking Amino Acid:
ILAYGNQESKLIILASGGPQ
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
90.3
0.91
0.7
88.5
28.4
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
53.4
0.18
1.5
65.91
39.2

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024642
46024892 - 46033208
8317
ENSAPLT00000014096
46024892 - 46033208
8317