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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46028196_46028444_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46028196 - 46028444
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGAACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CCTTTCTGAACT
Flanking Amino Acid:
HPPSHWPLIKATVGLIRNLA
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
27.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74.3
0.55
0.9
67.3
38.1
Minor 5ss
33.7
-1.9
3.4
48.7
47.5
Minor BPS
69.2
0.68
1.5
80.07
42.1

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024642
46024892 - 46033208
8317
ENSAPLT00000014096
46024892 - 46033208
8317