About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46028604_46029534_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
46028604 - 46029534

Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTG|GTAAGCGGC

5'SS Class:
major

3'SS Sequence:
TTGTCCTAACTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTAAAA

U12 Branch Point Sequence:
TCAACTTTAAAA

Flanking Amino Acid:
SMGGTQQQFVEGVRMEEIVE

Intron Amino Acid Position:
562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.6
0.7
1
63.2
41.8

Major BPS
73.1
0.58
1
79.6
29.1

Major PPT
65.7
0.35
1
60.4
40.6

Minor 5ss
36.8
-1.5
3.4
46.9
44

Minor BPS
61.9
0.37
1.4
66.23
39.9

Associated Gene:

Gene:
CTNNB1

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

46024892 - 46033208
8317

46024892 - 46033208
8317