About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46030158_46031528_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46030158 - 46031528
Intron Length:
1371

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TCTTTTGTAACT
Flanking Amino Acid:
FRTEPMAWNETADLGLDIGA
Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
67.8
0.4
1
59.4
42
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
62.8
0.48
2
82.56
39.6

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024642
46024892 - 46033208
8317
ENSAPLT00000014096
46024892 - 46033208
8317