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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46031590_46032335_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46031590 - 46032335
Intron Length:
746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TTAACTTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CCACCTTTAACT
Flanking Amino Acid:
QGEPLGYRPDDPSYRSFHSG
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.7
45.5
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
74.8
0.56
0.8
73.6
36.6
Minor 5ss
44.4
-0.6
2.8
59.2
45.2
Minor BPS
68.1
0.65
1.3
73.91
43

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014096
46024892 - 46033208
8317