About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46031590_46032846_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46031590 - 46032846
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
GAATGCTGACAC
Flanking Amino Acid:
QGEPLGYRPDAVSSE*
Intron Amino Acid Position:
713

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
65.7
45.5
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
44.4
-0.6
2.8
59.2
45.2
Minor BPS
41
-0.7
2
47.78
40.8

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024642
46024892 - 46033208
8317