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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46032557_46032846_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
46032557 - 46032846
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
GAATGCTGACAC
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
41
-0.7
2
47.78
40.8

Associated Gene:

Gene:
CTNNB1
Ensembl Gene ID:
ENSAPLG00000013465
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014096
46024892 - 46033208
8317