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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46038442_46090598_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46038442 - 46090598
Intron Length:
52157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
CCTTTGATAACC
Flanking Amino Acid:
KLLLRIIKRLITSNEKRLES
Intron Amino Acid Position:
1252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
84
0.85
0.9
75
39.9
Major PPT
87.6
0.85
0.8
80.3
37.3
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
47.4
-0.2
2.3
62.12
43.7

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044566
46035045 - 46266003
230959