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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4607699_4607781_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4607699 - 4607781
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCGTTACT
5'SS Class:
weak_major
3'SS Sequence:
ATTGTCATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTGACCTGAATA
Flanking Amino Acid:
IHQCLGLQQWVYVLKRPHVD
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.4
59.1
45.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.1
0.61
0.9
67.3
43.1
Minor 5ss
32
-2.1
2.9
35.6
40.5
Minor BPS
66
0.5
1.5
73.2
38.7

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023072
4542452 - 4612877
70426