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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4607875_4609528_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4607875 - 4609528
Intron Length:
1654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTGC
5'SS Class:
major
3'SS Sequence:
TTGTATTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACTT
Flanking Amino Acid:
CVLFTASLAKYADPVADLLD
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.2
67
39.3
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.3
0.57
1.1
79.5
37.9
Minor 5ss
43
-0.8
2.4
53.7
43.4
Minor BPS
51.5
0.12
1.7
68.72
42.7

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023072
4542452 - 4612877
70426
ENSAPLT00000019864
4542452 - 4612877
70426
ENSAPLT00000017425
4542452 - 4612877
70426
ENSAPLT00000010273
4553987 - 4612877
58891