About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46089314_46090598_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46089314 - 46090598
Intron Length:
1285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGCT
U12 Branch Point Sequence:
TGCTTTTCCACA
Flanking Amino Acid:
KLLLRIIKRLDK*
Intron Amino Acid Position:
1252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
38.1
-0.7
4.3
71.4
45.1
Major PPT
80.7
0.69
0.8
75.8
32.8
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
47
-0.2
1.9
59.24
41.1

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014398
46089305 - 46266003
176699