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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4609715_4611600_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4609715 - 4611600
Intron Length:
1886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GAAGTCTTGACA
Flanking Amino Acid:
ASYIFHPENAVPVQSWFDDM
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
86.6
0.82
0.7
84.6
30.4
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
57
0.21
1.4
60.19
39.5

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023072
4542452 - 4612877
70426
ENSAPLT00000019864
4542452 - 4612877
70426
ENSAPLT00000017425
4542452 - 4612877
70426
ENSAPLT00000010273
4553987 - 4612877
58891