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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_4611723_4611792_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4611723 - 4611792
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCCTT
5'SS Class:
weak_major
3'SS Sequence:
CCATCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
ATGTCTCCATCT
Flanking Amino Acid:
VYSMLHKLCNSSFKCKLWGG
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.3
63.6
48.1
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
82.4
0.73
0.8
80
31.7
Minor 5ss
48
-0.2
3.3
73.5
43.2
Minor BPS
45.8
-0.2
2
67.28
43.5

Associated Gene:

Gene:
CTDSPL
Ensembl Gene ID:
ENSAPLG00000030602
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019864
4542452 - 4612877
70426
ENSAPLT00000017425
4542452 - 4612877
70426
ENSAPLT00000010273
4553987 - 4612877
58891
ENSAPLT00000023072
4542452 - 4612877
70426