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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46197255_46201721_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46197255 - 46201721
Intron Length:
4467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTAAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTTGTTTAAAT
Flanking Amino Acid:
REMLLLSCQARLVMYIERDS
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.9
0.54
1
68
41.6
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
65
0.55
1.8
83.47
37.5

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044566
46035045 - 46266003
230959
ENSAPLT00000014398
46089305 - 46266003
176699