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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46213242_46221268_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46213242 - 46221268
Intron Length:
8027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
CTTATTCCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCCCCTTATTC
Flanking Amino Acid:
TVLMRCLREGEDRVVNHLAA
Intron Amino Acid Position:
642

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
0.8
73.4
31.6
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
64
0.42
1.6
71.6
40

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044566
46035045 - 46266003
230959
ENSAPLT00000014398
46089305 - 46266003
176699