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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46244678_46245453_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46244678 - 46245453
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
QQLRAAANWDIRAKVARVIA
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
76.8
0.6
0.9
70.5
38.8
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044566
46035045 - 46266003
230959
ENSAPLT00000014398
46089305 - 46266003
176699