About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46252730_46252854_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46252730 - 46252854
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTCTTCCTAACT
Flanking Amino Acid:
IKLQRNSFKIVENPAELRPK
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
71.7
0.76
1.6
88.18
37

Associated Gene:

Gene:
ULK4
Ensembl Gene ID:
ENSAPLG00000013816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044566
46035045 - 46266003
230959
ENSAPLT00000014398
46089305 - 46266003
176699