About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46255466_46256285_R


Intron Information:

Intron Rank:
7

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
46255466 - 46256285

Intron Length:
820

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGG|GTAACAATT

5'SS Class:
major

3'SS Sequence:
TAAGTGTTTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCTTAC

U12 Branch Point Sequence:
CTTACCTTAAGT

Flanking Amino Acid:
YEDPLPPRPAGSASQKPSAD

Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.8
0.51
1.2
75.5
40.6

Major BPS
68.9
0.47
1
59.6
38.6

Major PPT
72.9
0.51
1
65.7
44.9

Minor 5ss
44.5
-0.6
3
58.9
45.4

Minor BPS
71
0.74
1.7
84.56
42.1

Associated Gene:

Gene:
ULK4

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

46035045 - 46266003
230959

46089305 - 46266003
176699