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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_46301788_46322452_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46301788 - 46322452
Intron Length:
20665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGAATTAAGC
Flanking Amino Acid:
DDQEPKELTTRLLEASSSKE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
85.5
0.8
0.9
79.9
37.7
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
49
-0
2.1
68.45
42.8

Associated Gene:

Gene:
TRAK1
Ensembl Gene ID:
ENSAPLG00000013951
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045081
46301702 - 46402539
100838